Cell Segmentation Free Analysis of Spatial Transcriptomics Data
| Veranstaltungsdetails | |
|---|---|
| Datum: | 23.01.2024, 17:30 Uhr - 18:30 Uhr |
| Ort: | Großer Hörsaal Universitätsklinikum, Stenglinstraße 2, 86156 Augsburg |
| Veranstalter: | Lehrstuhl für Biomedizinische Informatik, Data Mining und Data Analytics |
| Themenbereiche: | Informatik, Gesundheit und Medizin |
| Veranstaltungsreihe: | Medical Information Sciences |
| Veranstaltungsart: | Vortragsreihe |
| Vortragende: | Naveed Ishaque, Ph.D. |
In diesem Wintersemester wird die im letzten Jahr erfolgreich gestartete Vortragsreihe Medical Information Sciences fortgesetzt. Renommierte Wissenschaftlerinnen und Wissenschaftler unterschiedlicher Fachdisziplinen und Forschungsstandorte geben jeden Dienstag ab 17:30 Uhr Einblicke in aktuelle Fragestellungen und Anwendungsgebiete des breiten Forschungsfeldes Medical Information Sciences.
Spatial transcriptomics technologies have revolutionised how we characterise cellular systems - they are able to profile gene expression in the native tissue context, thus preserving cellular organisation in tissue and niches. In this talk I will present some of the challenges associated with analysis spatial transcriptomics data, in particular cell segmentation, and how we are trying to develop tools to address these issues.
Weitere Veranstaltungen der Veranstaltungsreihe "Medical Information Sciences"
-
„From Modeling Molecular Networks to Predictive Medicine”14. November, 2022
-
„From protein identification to functional interpretation“21. November, 2022
-
Medical Information Sciences28. November, 2022
-
From functional drug profiling to multi-omics biomarker identification in paediatric solid tumors28. November, 2022
-
Tiled Amplicons Panels in NGS-Based Genetic Testing05. Dezember, 2022
-
Retrieval-powered Zero-shot Text Classification16. Januar, 2023
-
Implementation and Application of Clinical Data Warehousing for Studies in Patients with Heart Failure23. Januar, 2023
-
Morphological ECG Analysis – Revealing Valuable Features for Medical Diagnosis30. Januar, 2023
-
Using Anatomical and Physiological Constraints in Machine Learning for Medical Image Processing02. Mai, 2023
-
Data-driven Quality Improvement in the ICU: How to Improve Quality of Care Using a Quality Registry?09. Mai, 2023
-
Prognostic and Predictive Models in Multiple Sclerosis - a Task that is Overwhelming the Community16. Mai, 2023
-
Closing the Loop with Digital Health Systems23. Mai, 2023
-
Genomic Data Protection and Management [research focus]13. Juni, 2023
-
Clinical Decision Support in Critical Care20. Juni, 2023
-
Retinal Vessel Analysis – New Frontiers for Cardiovascular Risk Assessment and Treatment Monitoring27. Juni, 2023
-
Challenges of Medical Image Analysis in Rare Disorders04. Juli, 2023
-
From Code to Clinic: LUMC’s Practical Approach to AI Implementation11. Juli, 2023
-
Multi-Omics Data Analysis [research focus]18. Juli, 2023
-
Natural Language Processing in the Clinical Narrative24. Oktober, 2023
-
Stress Detection and Management in Daily Life Using Wearable Sensors07. November, 2023
-
Can’t Touch This! - Unobtrusive Sensing Using Artificial Intelligence14. November, 2023
-
Health Data FAIRification: Challenges and Opportunities21. November, 2023
-
GestaltMatcher: an AI that can Delineate Dysfunction from Dysmorphism28. November, 2023
-
Responsible AI for Mental Healthcare: Potential and Pitfalls05. Dezember, 2023
-
Mobile Neurophysiological Monitoring: Novel Sensors and Signal Processing Algorithm12. Dezember, 2023
-
Anaesthesia and Intensive Care Medicine 4.009. Januar, 2024
-
Live Brain Cancer Diagnostics from Sparse Epignomic Data16. Januar, 2024
-
Cell Segmentation Free Analysis of Spatial Transcriptomics Data23. Januar, 2024
-
Magnetoelectric Sensor Systems for (Bio-) Medical Applications30. Januar, 2024
-
Translational Research Informatics: Projects, Strategies and Structures in Berlin and Germany06. Februar, 2024
-
Applications of Systems Biology in Drug Research and Development23. April, 2024
-
Modeling & Simulation of Cardiac Function: Combining Mechanistic Models and Artificial Intelligence07. Mai, 2024
-
3D Computer Vision meets Medical Data and the OR04. Juni, 2024
-
Quantitative Imaging in Neuroceptor Positron Emission Tomography11. Juni, 2024
-
From Data to Knowledge: The Impact of Semantic Data Integration18. Juni, 2024
-
Data-driven Investigation and Characterisation of the Functional Connectome in Spider Phobia25. Juni, 2024
-
DeepRVAT- Integration of Variant Annotations02. Juli, 2024
-
Integration and Management of Clinical Routine and Research Data09. Juli, 2024
-
Opening the Black Box: Interpretable AI Models in Genomics16. Juli, 2024
-
3D Computer Vision meets Medical Data and the OR24. Oktober, 2024
-
Vortrag "3D Computer Vision meets Medical Data and the OR" von Dr. Benjamin Busam24. Oktober, 2024
-
Advancing and Assessing Computational Methods in Systems Biomedicine07. November, 2024
-
Vortrag "Advancing and Assessing Computational Methods in Systems Biomedicine"07. November, 2024
-
Vortragsreihe Medical Information Sciences „tba“14. November, 2024
-
Development and Application of Biostatistical Methods to Improve Predictive Modeling of Clinical Data for Precision Medicine21. November, 2024
-
Methylation based Classification of Tumours28. November, 2024
-
From Computer Vision to Geometry: Automating Analyses of Movement05. Dezember, 2024
-
Vortrag "Electrical Bioimpedance: Instrumentation and Applications"12. Dezember, 2024
-
AI in Biomedical Research and the Diagnostics of Blood Diseases09. Januar, 2025
Weitere Veranstaltungen: Lehrstuhl für Biomedizinische Informatik, Data Mining und Data Analytics
-
Dezember 2024
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
-
Dezember 2024
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
-
Dezember 2024 / Januar 2025
-
30
-
31
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
-
Januar 2025
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
-
Januar 2025 / Februar 2025
-
27
-
28
-
29
-
30
-
31
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
-
Februar 2025
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
-
Februar 2025 / März 2025
-
24
-
25
-
26
-
27
-
28
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
-
März 2025
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
-
März 2025 / April 2025
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-
31
-
01
-
02
-
03
-
04
-
05
-
06
-
-
April 2025
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
-
April 2025 / Mai 2025
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-
01
-
02
-
03
-
04
-
-
Mai 2025
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
-
Mai 2025 / Juni 2025
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-
31
-
01
-
-
Juni 2025
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
-
Juni 2025
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
-
Juni 2025 / Juli 2025
-
30
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
-
Juli 2025
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
-
Juli 2025 / August 2025
-
28
-
29
-
30
-
31
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
-
August 2025
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
-
August 2025 / September 2025
-
25
-
26
-
27
-
28
-
29
-
30
-
31
-
01
-
02
-
03
-
04
-
05
-
06
-
07
-
-
September 2025
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
20
-
21
-
-
September 2025 / Oktober 2025
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-
01
-
02
-
03
-
04
-
05
-
-
Oktober 2025
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
17
-
18
-
19
-
-
Oktober 2025 / November 2025
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-
31
-
01
-
02
-
-
November 2025
-
03
-
04
-
05
-
06
-
07
-
08
-
09
-
10
-
11
-
12
-
13
-
14
-
15
-
16
-
-
November 2025
-
17
-
18
-
19
-
20
-
21
-
22
-
23
-
24
-
25
-
26
-
27
-
28
-
29
-
30
-